Seminars

Time: Wed 11am - 1pm

Location: Orchard Commons Rm 4074

date lect raw_notes instructor
Jan-03 Wed seminar-1 Introduction to version control, Git, GitHub TA
Jan-10 Wed seminar-2a Introduction to Markdown, Knitr TA
Jan-10 Wed seminar-2b R graphics – ggplot2, lattice TA
Jan-17 Wed seminar-2c Getting your hands dirty with R – simulate data and do some statistics TA
Jan-24 Wed seminar-3 Load and analyze some gene expression data – data aggregation with dplyr TA
Jan-31 Wed seminar-4 Two group testing, fitting and interpreting linear models TA
Feb-07 Wed seminar-5 RNA-seq: from beginning to end – BAM to count data (optional) TA
Feb-14 Wed seminar-6 Dimensionality reduction and data visualization – clustering, PCA, t-sne TA
Feb-28 Wed seminar-7 Methylation analysis I – e.g., investigating cell type heterogeneity TA
Feb-28 Wed seminar-7 Methylation analysis I – e.g., investigating cell type heterogeneity TA
Mar-07 Wed seminar-8 eQTL (or mQTL) analysis – finding cis variants per gene, testing for association TA
Mar-07 Wed seminar-8 eQTL (or mQTL) analysis – finding cis variants per gene, testing for association TA
Mar-14 Wed seminar-9 Supervised learning, cross-validation, variable selection TA
Mar-21 Wed seminar-10 Geneset Enrichment Analysis TA
Mar-28 Wed seminar-11 Group project work TA
Apr-04 Wed seminar-12 Group project work TA

Supplemental materials